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* first commit * first commit * update test.yml * update test.yml * Update modules/picard/crosscheckfingerprints/main.nf Co-authored-by: Jose Espinosa-Carrasco <kadomu@gmail.com> * Update modules/picard/crosscheckfingerprints/main.nf Co-authored-by: Jose Espinosa-Carrasco <kadomu@gmail.com> * add support for vcf haplotype maps * update test * update test data config, use test data * fix exit code * Update modules/picard/crosscheckfingerprints/main.nf Co-authored-by: Sateesh Peri <33637490+sateeshperi@users.noreply.github.com> * Update modules/picard/crosscheckfingerprints/main.nf Co-authored-by: Sateesh Peri <33637490+sateeshperi@users.noreply.github.com> * remove unused stub Co-authored-by: Jose Espinosa-Carrasco <kadomu@gmail.com> Co-authored-by: Sateesh Peri <33637490+sateeshperi@users.noreply.github.com> |
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| .. | ||
| addorreplacereadgroups | ||
| cleansam | ||
| collecthsmetrics | ||
| collectmultiplemetrics | ||
| collectwgsmetrics | ||
| createsequencedictionary | ||
| crosscheckfingerprints | ||
| filtersamreads | ||
| fixmateinformation | ||
| liftovervcf | ||
| markduplicates | ||
| mergesamfiles | ||
| sortsam | ||
| sortvcf | ||