Ramprasad Neethiraj 49b18b1639 add stub to modules used in raredisease pipeline (#1206) ... * add stub section * add stub for bcftools norm * add stub to more modules * fix expansionhunter tests * revert changes -picard * Update stub to write version no.s to a file * add picard * revert picard again * add stubs to more modules * fix bwamem2 * add bcftools view * add stubs * fix svdb query * review suggestions		2022-03-28 17:48:39 +02:00
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addorreplacereadgroups	Prettier (#1405)	2022-03-18 14:27:50 +01:00
cleansam	update args & convert to bam (#1355)	2022-02-25 11:06:39 -07:00
collecthsmetrics	add stub to modules used in raredisease pipeline (#1206)	2022-03-28 17:48:39 +02:00
collectmultiplemetrics	add stub to modules used in raredisease pipeline (#1206)	2022-03-28 17:48:39 +02:00
collectwgsmetrics	Fix formatting in yaml files, add yamllint config (#1279)	2022-02-15 11:15:27 +00:00
createsequencedictionary	Prettier (#1405)	2022-03-18 14:27:50 +01:00
filtersamreads	Fix formatting in yaml files, add yamllint config (#1279)	2022-02-15 11:15:27 +00:00
fixmateinformation	Prettier (#1405)	2022-03-18 14:27:50 +01:00
markduplicates	add stub to modules used in raredisease pipeline (#1206)	2022-03-28 17:48:39 +02:00
mergesamfiles	Fix formatting in yaml files, add yamllint config (#1279)	2022-02-15 11:15:27 +00:00
sortsam	Fix formatting in yaml files, add yamllint config (#1279)	2022-02-15 11:15:27 +00:00
sortvcf	add stub to modules used in raredisease pipeline (#1206)	2022-03-28 17:48:39 +02:00