mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-12-22 19:18:17 +00:00
33 lines
No EOL
1.3 KiB
Text
33 lines
No EOL
1.3 KiB
Text
#!/usr/bin/env nextflow
|
|
|
|
nextflow.enable.dsl = 2
|
|
|
|
include { GATK4_SPLITINTERVALS } from '../../../../modules/gatk4/splitintervals/main.nf'
|
|
|
|
workflow test_gatk4_splitintervals_bed {
|
|
|
|
input = [
|
|
[ id:'test' ], // meta map
|
|
file(params.test_data['homo_sapiens']['genome']['genome_multi_interval_bed'], checkIfExists: true)
|
|
]
|
|
|
|
fasta = file(params.test_data['homo_sapiens']['genome']['genome_fasta'], checkIfExists: true)
|
|
fasta_fai = file(params.test_data['homo_sapiens']['genome']['genome_fasta_fai'], checkIfExists: true)
|
|
fasta_dict = file(params.test_data['homo_sapiens']['genome']['genome_dict'], checkIfExists: true)
|
|
|
|
GATK4_SPLITINTERVALS ( input, fasta, fasta_fai, fasta_dict)
|
|
}
|
|
|
|
workflow test_gatk4_splitintervals_intervals {
|
|
|
|
input = [
|
|
[ id:'test' ], // meta map
|
|
file(params.test_data['homo_sapiens']['genome']['genome_interval_list'], checkIfExists: true)
|
|
]
|
|
|
|
fasta = file(params.test_data['homo_sapiens']['genome']['genome_fasta'], checkIfExists: true)
|
|
fasta_fai = file(params.test_data['homo_sapiens']['genome']['genome_fasta_fai'], checkIfExists: true)
|
|
fasta_dict = file(params.test_data['homo_sapiens']['genome']['genome_dict'], checkIfExists: true)
|
|
|
|
GATK4_SPLITINTERVALS ( input, fasta, fasta_fai, fasta_dict)
|
|
} |