mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-11 04:33:10 +00:00
e745e167c1
* fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
47 lines
1.3 KiB
YAML
47 lines
1.3 KiB
YAML
name: minia
|
|
description: Minia is a short-read assembler based on a de Bruijn graph
|
|
keywords:
|
|
- assembly
|
|
tools:
|
|
- minia:
|
|
description: |
|
|
Minia is a short-read assembler based on a de Bruijn graph, capable of assembling
|
|
a human genome on a desktop computer in a day. The output of Minia is a set of contigs.
|
|
homepage: https://github.com/GATB/minia
|
|
documentation: https://github.com/GATB/minia
|
|
licence: ["AGPL-3.0-or-later"]
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- reads:
|
|
type: file
|
|
description: Input reads in FastQ format
|
|
pattern: "*.{fastq.gz, fastq}"
|
|
output:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- contigs:
|
|
type: file
|
|
description: The assembled contigs
|
|
pattern: "*.contigs.fa"
|
|
- unitigs:
|
|
type: file
|
|
description: The assembled unitigs
|
|
pattern: "*.unitigs.fa"
|
|
- h5:
|
|
type: file
|
|
description: Minia output h5 file
|
|
pattern: "*{.h5}"
|
|
- versions:
|
|
type: file
|
|
description: File containing software versions
|
|
pattern: "versions.yml"
|
|
authors:
|
|
- "@drpatelh"
|
|
- "@kevinmenden"
|