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d5f6985607
* add new nucmer module * Apply suggestions from code review Co-authored-by: Robert A. Petit III <robbie.petit@gmail.com> * update tests with file produced by input * Update main.nf * Update meta.yml Co-authored-by: Michael Cipriano <mcipriano@gmail.com> Co-authored-by: Robert A. Petit III <robbie.petit@gmail.com> Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
14 lines
444 B
Text
14 lines
444 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { NUCMER } from '../../../modules/nucmer/main.nf' addParams( options: [:] )
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workflow test_nucmer {
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input = [ [ id:'test', single_end:false ], // meta map
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file(params.test_data['sarscov2']['genome']['genome_fasta'], checkIfExists: true),
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file(params.test_data['sarscov2']['genome']['transcriptome_fasta'], checkIfExists: true) ]
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NUCMER ( input )
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}
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