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e745e167c1
* fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
44 lines
1.1 KiB
YAML
44 lines
1.1 KiB
YAML
name: flash
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description: Perform merging of mate paired-end sequencing reads
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keywords:
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- sort
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- reads merging
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- merge mate pairs
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tools:
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- flash:
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description: |
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Merge mates from fragments that are shorter than twice the read length
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homepage: https://ccb.jhu.edu/software/FLASH/
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documentation: {}
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doi: 10.1093/bioinformatics/btr507
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licence: ["GPL v3+"]
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- reads:
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type: file
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description: |
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List of input FastQ files of size 2; i.e., paired-end data.
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pattern: "*fastq.gz"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- reads:
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type: file
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description: The merged fastq reads
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pattern: "*fastq.gz"
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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authors:
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- "@Erkison"
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