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e745e167c1
* fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
48 lines
1.2 KiB
YAML
48 lines
1.2 KiB
YAML
name: rasusa
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description: Randomly subsample sequencing reads to a specified coverage
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keywords:
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- coverage
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- depth
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- subsampling
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tools:
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- rasusa:
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description: Randomly subsample sequencing reads to a specified coverage
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homepage: https://github.com/mbhall88/rasusa
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documentation: https://github.com/mbhall88/rasusa/blob/master/README.md
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tool_dev_url: https://github.com/mbhall88/rasusa
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doi: "10.5281/zenodo.3731394"
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licence: ["MIT"]
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- reads:
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type: file
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description: List of input paired-end FastQ files
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- genome_size:
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type: string
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description: Genome size of the species
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- depth_cutoff:
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type: integer
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description: Depth of coverage cutoff
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- reads:
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type: file
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description: Reads with subsampled coverage
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pattern: "*.fastq.gz"
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authors:
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- "@thanhleviet"
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