mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-10 20:23:10 +00:00
e745e167c1
* fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
32 lines
868 B
YAML
32 lines
868 B
YAML
name: snpsites
|
|
description: Rapidly extracts SNPs from a multi-FASTA alignment.
|
|
keywords:
|
|
- SNPs
|
|
- invariant
|
|
- constant
|
|
tools:
|
|
- snpsites:
|
|
description: Rapidly extracts SNPs from a multi-FASTA alignment.
|
|
homepage: https://www.sanger.ac.uk/tool/snp-sites/
|
|
documentation: https://github.com/sanger-pathogens/snp-sites
|
|
licence: ["GPL-3.0-or-later"]
|
|
input:
|
|
- alignment:
|
|
type: file
|
|
description: fasta alignment file
|
|
pattern: "*.{fasta,fas,fa,aln}"
|
|
output:
|
|
- versions:
|
|
type: file
|
|
description: File containing software versions
|
|
pattern: "versions.yml"
|
|
- fasta:
|
|
type: file
|
|
description: Variant fasta file
|
|
pattern: "*.{fas}"
|
|
- constant_sites:
|
|
type: file
|
|
description: Text file containing counts of constant sites
|
|
pattern: "*.{sites.txt}"
|
|
authors:
|
|
- "@avantonder"
|