mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-14 05:43:08 +00:00
e937c7950a
* Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml
12 lines
422 B
Text
12 lines
422 B
Text
#!/usr/bin/env nextflow
|
|
|
|
nextflow.enable.dsl = 2
|
|
|
|
include { BEDTOOLS_GETFASTA } from '../../../../modules/bedtools/getfasta/main.nf' addParams( options: [:] )
|
|
|
|
workflow test_bedtools_getfasta {
|
|
bed = file(params.test_data['sarscov2']['genome']['test_bed'], checkIfExists: true)
|
|
fasta = file(params.test_data['sarscov2']['genome']['genome_fasta'], checkIfExists: true)
|
|
|
|
BEDTOOLS_GETFASTA ( bed, fasta )
|
|
}
|