mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-09-22 16:12:04 +00:00
e937c7950a
* Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml
55 lines
2.3 KiB
YAML
55 lines
2.3 KiB
YAML
- name: hisat2 align test_hisat2_align_single_end
|
|
command: nextflow run tests/modules/hisat2/align -entry test_hisat2_align_single_end -c tests/config/nextflow.config
|
|
tags:
|
|
- hisat2
|
|
- hisat2/align
|
|
files:
|
|
- path: output/hisat2/test.hisat2.summary.log
|
|
md5sum: 7b8a9e61b7646da1089b041333c41a87
|
|
- path: output/hisat2/genome.splice_sites.txt
|
|
md5sum: d41d8cd98f00b204e9800998ecf8427e
|
|
- path: output/hisat2/test.bam
|
|
- path: output/index/hisat2/genome.5.ht2
|
|
md5sum: 91198831aaba993acac1734138c5f173
|
|
- path: output/index/hisat2/genome.7.ht2
|
|
md5sum: 9013eccd91ad614d7893c739275a394f
|
|
- path: output/index/hisat2/genome.1.ht2
|
|
md5sum: 3ea3dc41304941ad8d047e4d71b4899e
|
|
- path: output/index/hisat2/genome.2.ht2
|
|
md5sum: 47b153cd1319abc88dda532462651fcf
|
|
- path: output/index/hisat2/genome.6.ht2
|
|
md5sum: 265e1284ce85686516fae5d35540994a
|
|
- path: output/index/hisat2/genome.3.ht2
|
|
md5sum: 4ed93abba181d8dfab2e303e33114777
|
|
- path: output/index/hisat2/genome.8.ht2
|
|
md5sum: 33cdeccccebe80329f1fdbee7f5874cb
|
|
- path: output/index/hisat2/genome.4.ht2
|
|
md5sum: c25be5f8b0378abf7a58c8a880b87626
|
|
|
|
- name: hisat2 align test_hisat2_align_paired_end
|
|
command: nextflow run tests/modules/hisat2/align -entry test_hisat2_align_paired_end -c tests/config/nextflow.config
|
|
tags:
|
|
- hisat2
|
|
- hisat2/align
|
|
files:
|
|
- path: output/hisat2/test.hisat2.summary.log
|
|
md5sum: 9839b31db795958cc4b70711a3414e9c
|
|
- path: output/hisat2/genome.splice_sites.txt
|
|
md5sum: d41d8cd98f00b204e9800998ecf8427e
|
|
- path: output/hisat2/test.bam
|
|
- path: output/index/hisat2/genome.5.ht2
|
|
md5sum: 91198831aaba993acac1734138c5f173
|
|
- path: output/index/hisat2/genome.7.ht2
|
|
md5sum: 9013eccd91ad614d7893c739275a394f
|
|
- path: output/index/hisat2/genome.1.ht2
|
|
md5sum: 3ea3dc41304941ad8d047e4d71b4899e
|
|
- path: output/index/hisat2/genome.2.ht2
|
|
md5sum: 47b153cd1319abc88dda532462651fcf
|
|
- path: output/index/hisat2/genome.6.ht2
|
|
md5sum: 265e1284ce85686516fae5d35540994a
|
|
- path: output/index/hisat2/genome.3.ht2
|
|
md5sum: 4ed93abba181d8dfab2e303e33114777
|
|
- path: output/index/hisat2/genome.8.ht2
|
|
md5sum: 33cdeccccebe80329f1fdbee7f5874cb
|
|
- path: output/index/hisat2/genome.4.ht2
|
|
md5sum: c25be5f8b0378abf7a58c8a880b87626
|