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e937c7950a
* Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml
17 lines
605 B
YAML
17 lines
605 B
YAML
- name: samtools index bai
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command: nextflow run tests/modules/samtools/index -entry test_samtools_index_bai -c tests/config/nextflow.config
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tags:
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- samtools
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- samtools/index
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files:
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- path: output/samtools/test.paired_end.sorted.bam.bai
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md5sum: 704c10dd1326482448ca3073fdebc2f4
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- name: samtools index csi
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command: nextflow run tests/modules/samtools/index -entry test_samtools_index_csi -c tests/config/nextflow.config
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tags:
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- samtools
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- samtools/index
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files:
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- path: output/samtools/test.paired_end.sorted.bam.csi
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md5sum: 3dd9e3ed959fca075b88bb8dc3cf7dbd
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