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e937c7950a
* Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml
20 lines
808 B
YAML
20 lines
808 B
YAML
- name: strelka germline
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command: nextflow run ./tests/modules/strelka/germline -entry test_strelka_germline -c tests/config/nextflow.config
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tags:
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- strelka
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- strelka/germline
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files:
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- path: output/strelka/test.variants.vcf.gz
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- path: output/strelka/test.variants.vcf.gz.tbi
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- path: output/strelka/test.genome.vcf.gz
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- path: output/strelka/test.genome.vcf.gz.tbi
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- name: strelka germline target bed
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command: nextflow run ./tests/modules/strelka/germline -entry test_strelka_germline_target_bed -c tests/config/nextflow.config
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tags:
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- strelka
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- strelka/germline
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files:
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- path: output/strelka/test.variants.vcf.gz
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- path: output/strelka/test.variants.vcf.gz.tbi
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- path: output/strelka/test.genome.vcf.gz
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- path: output/strelka/test.genome.vcf.gz.tbi
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