mirror of
https://github.com/MillironX/nf-core_modules.git
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62 lines
2.2 KiB
YAML
62 lines
2.2 KiB
YAML
- name: Run samtools flagstat test workflow
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command: nextflow run ./tests/software/samtools/ -profile docker -entry test_samtools_flagstat -c tests/config/nextflow.config
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tags:
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- samtools
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- samtools_flagstat
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files:
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- path: output/samtools/test.paired_end.sorted.bam.flagstat
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md5sum: 80590621c74f5ee43ada20d010a3837f
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- name: Run samtools idxstats test workflow
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command: nextflow run ./tests/software/samtools/ -profile docker -entry test_samtools_idxstats -c tests/config/nextflow.config
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tags:
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- samtools
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- samtools_idxstats
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files:
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- path: output/samtools/test.paired_end.sorted.bam.idxstats
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md5sum: 3bee8b7d55e412da2b3816c5a18d60d5
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- name: Run samtools index test workflow
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command: nextflow run ./tests/software/samtools/ -profile docker -entry test_samtools_index -c tests/config/nextflow.config
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tags:
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- samtools
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- samtools_index
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files:
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- path: output/samtools/test.paired_end.sorted.bam.bai
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md5sum: 67338c2995eae82c849830ca55aa7bd1
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- name: Run samtools sort test workflow
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command: nextflow run ./tests/software/samtools/ -profile docker -entry test_samtools_sort -c tests/config/nextflow.config
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tags:
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- samtools
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- samtools_sort
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files:
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- path: output/samtools/test.bam
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md5sum: a41bfadacd2eeef1d31e05c135cc4f4e
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- name: Run samtools stats test workflow
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command: nextflow run ./tests/software/samtools/ -profile docker -entry test_samtools_stats -c tests/config/nextflow.config
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tags:
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- samtools
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- samtools_stats
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files:
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- path: output/samtools/test.paired_end.sorted.bam.stats
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md5sum: 06c183864d6e47ab89b0650cae831a93
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- name: Run samtools view test workflow
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command: nextflow run ./tests/software/samtools/ -profile docker -entry test_samtools_view -c tests/config/nextflow.config
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tags:
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- samtools
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- samtools_view
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files:
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- path: output/samtools/test.bam
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md5sum: 7ea2c325e2249ed7ef44e1d9fdc4f8ff
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- name: Run samtools mpileup test workflow
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command: nextflow run ./tests/software/samtools/ -profile docker -entry test_samtools_mpileup -c tests/config/nextflow.config
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tags:
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- samtools
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- samtools_mpileup
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files:
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- path: output/samtools/test.mpileup
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md5sum: 95c2646fa7bd535207722008c581c81d
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