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https://github.com/MillironX/nf-core_modules.git
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d1c6082a66
* Update HISAT2 build module * Bump preseq version * Fix tests * Add meta.yml for preseq to fix linting * Auto-detect --genomeSAindexNbases for smaller genomes * Add placeholder to use human data for the tests * Add CSI output option to samtools/index * Fix samtools/index tests
47 lines
1.2 KiB
YAML
Executable file
47 lines
1.2 KiB
YAML
Executable file
name: preseq_lcextrap
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description: Software for predicting library complexity and genome coverage in high-throughput sequencing
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keywords:
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- preseq
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- library
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- complexity
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tools:
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- preseq:
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description: Software for predicting library complexity and genome coverage in high-throughput sequencing
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homepage: http://smithlabresearch.org/software/preseq/
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documentation: None
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tool_dev_url: None
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doi: ""
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licence: ['GPL']
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- bam:
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type: file
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description: BAM/CRAM/SAM file
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pattern: "*.{bam,cram,sam}"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- version:
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type: file
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description: File containing software version
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pattern: "*.{version.txt}"
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- ccurve:
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type: file
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description: File containing output of Preseq lcextrap
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pattern: "*.{ccurve.txt}"
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- log:
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type: file
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description: Log file containing stderr produced by Preseq
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pattern: "*.{log}"
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authors:
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- "@drpatelh"
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