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9115c12f88
* new module: samtools/fastq * solve conflict: pytest_software.yml * solve linting conflicts * solved EditorConfig linting problem
14 lines
419 B
Text
14 lines
419 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { SAMTOOLS_FASTQ } from '../../../../software/samtools/fastq/main.nf' addParams( options: [:] )
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workflow test_samtools_fastq {
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def input = []
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input = [ [ id:'test', single_end:false ], // meta map
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file("${launchDir}/tests/data/genomics/sarscov2/bam/test_paired_end.sorted.bam", checkIfExists: true) ]
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SAMTOOLS_FASTQ ( input )
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}
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