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3eff67f54d
* added new module snpsift/split * added options.args * added .vcf.gz to input * removed test and updated to new NF DSL2 syntax * Updated to new NF DSL2 syntax * added option to join vcf files Co-authored-by: Robert A. Petit III <robbie.petit@gmail.com> Co-authored-by: FriederikeHanssen <Friederike.hanssen@qbic.uni-tuebingen.de>
44 lines
1.1 KiB
YAML
44 lines
1.1 KiB
YAML
name: snpsift_split
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description: Splits/Joins VCF(s) file into chromosomes
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keywords:
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- split
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- join
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- vcf
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tools:
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- snpsift:
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description: SnpSift is a toolbox that allows you to filter and manipulate annotated files
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homepage: https://pcingola.github.io/SnpEff/ss_introduction/
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documentation: https://pcingola.github.io/SnpEff/ss_introduction/
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tool_dev_url: https://github.com/pcingola/SnpEff
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doi: "10.3389/fgene.2012.00035"
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licence: ['MIT']
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- vcf:
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type: file (split) or list of files (join)
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description: VCF file(s)
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pattern: "*.{vcf,vcf.gz}"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- out_vcfs:
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type: file
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description: Split/Joined VCF file(s)
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pattern: "*.vcf"
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authors:
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- "@SusiJo"
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- "@jonasscheid"
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