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* Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml
36 lines
1 KiB
YAML
36 lines
1 KiB
YAML
name: bismark_genomepreparation
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description: |
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Converts a specified reference genome into two different bisulfite
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converted versions and indexes them for alignments.
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keywords:
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- bismark
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- 3-letter genome
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- index
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- methylation
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- 5mC
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- methylseq
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- bisulphite
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- fasta
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tools:
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- bismark:
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description: |
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Bismark is a tool to map bisulfite treated sequencing reads
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and perform methylation calling in a quick and easy-to-use fashion.
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homepage: https://github.com/FelixKrueger/Bismark
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documentation: https://github.com/FelixKrueger/Bismark/tree/master/Docs
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doi: 10.1093/bioinformatics/btr167
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input:
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- fasta:
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type: file
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description: Input genome fasta file
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output:
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- index:
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type: dir
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description: Bismark genome index directory
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pattern: "BismarkIndex"
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- version:
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type: file
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description: File containing software version
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pattern: "*.{version.txt}"
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authors:
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- "@phue"
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