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* Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml
44 lines
1.1 KiB
YAML
44 lines
1.1 KiB
YAML
name: flash
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description: Perform merging of mate paired-end sequencing reads
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keywords:
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- sort
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- reads merging
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- merge mate pairs
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tools:
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- flash:
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description: |
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Merge mates from fragments that are shorter than twice the read length
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homepage: https://ccb.jhu.edu/software/FLASH/
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documentation: {}
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doi: 10.1093/bioinformatics/btr507
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licence: ['GPL v3+']
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- reads:
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type: file
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description: |
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List of input FastQ files of size 2; i.e., paired-end data.
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pattern: "*fastq.gz"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- reads:
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type: file
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description: The merged fastq reads
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pattern: "*fastq.gz"
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- version:
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type: file
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description: File containing software version
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pattern: "*.{version.txt}"
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authors:
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- "@Erkison"
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