mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-12-23 11:38:17 +00:00
56 lines
1.4 KiB
YAML
56 lines
1.4 KiB
YAML
name: cnvpytor_view
|
|
description: view function to generate vcfs
|
|
keywords:
|
|
- cnv calling
|
|
tools:
|
|
- cnvpytor:
|
|
description: calling CNVs using read depth
|
|
homepage: https://github.com/abyzovlab/CNVpytor
|
|
documentation: https://github.com/abyzovlab/CNVpytor
|
|
tool_dev_url: https://github.com/abyzovlab/CNVpytor
|
|
doi: "10.1101/2021.01.27.428472v1"
|
|
licence: ["MIT"]
|
|
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test' ]
|
|
- pytor:
|
|
type: file
|
|
description: pytor file containing read depth data
|
|
pattern: "*.{pytor}"
|
|
- bin_sizes:
|
|
type: string
|
|
description: list of binsizes separated by space e.g. "1000 10000" and "1000"
|
|
- output_format:
|
|
type: string
|
|
description: output format of the cnv calls. Valid entries are "tsv", "vcf", and "xls"
|
|
|
|
output:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test' ]
|
|
- tsv:
|
|
type: file
|
|
description: tsv file containing cnv calls
|
|
pattern: "*.{tsv}"
|
|
- vcf:
|
|
type: file
|
|
description: vcf file containing cnv calls
|
|
pattern: "*.{vcf}"
|
|
- xls:
|
|
type: file
|
|
description: xls file containing cnv calls
|
|
pattern: "*.{xls}"
|
|
- versions:
|
|
type: file
|
|
description: File containing software versions
|
|
pattern: "versions.yml"
|
|
|
|
authors:
|
|
- "@sima-r"
|
|
- "@ramprasadn"
|