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be8d7b3293
* Rollback version * Start work rollback to 0.4.1 * Further changes * Re do dynamic flag creation * Prettier.
59 lines
1.8 KiB
YAML
59 lines
1.8 KiB
YAML
name: malt_build
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description: MALT, an acronym for MEGAN alignment tool, is a sequence alignment and analysis tool designed for processing high-throughput sequencing data, especially in the context of metagenomics.
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keywords:
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- malt
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- alignment
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- metagenomics
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- ancient DNA
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- aDNA
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- palaeogenomics
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- archaeogenomics
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- microbiome
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- database
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tools:
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- malt:
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description: A tool for mapping metagenomic data
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homepage: https://www.wsi.uni-tuebingen.de/lehrstuehle/algorithms-in-bioinformatics/software/malt/
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documentation: https://software-ab.informatik.uni-tuebingen.de/download/malt/manual.pdf
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tool_dev_url: None
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doi: "10.1038/s41559-017-0446-6"
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licence: ["GPL v3"]
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input:
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- fastas:
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type: file
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description: Directory of, or list of FASTA reference files for indexing
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pattern: "*/|*.fasta"
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- seq_type:
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type: string
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description: Type of input data
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pattern: "DNA|Protein"
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- mapping_file:
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type: file
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description: An unzipped MEGAN mapping file in .abin format (pre-2020), downloadable from https://software-ab.informatik.uni-tuebingen.de/download/megan6/old.html
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pattern: "*.abin"
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- mapping_type:
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type: value
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description: What type of accession to use for database construction.
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pattern: "gi|ref|syn"
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- mapping_type:
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type: value
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description: Which database the mapping file is derived from.
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pattern: "eggnog|interpro2go|kegg|seed|taxonomy"
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output:
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- index:
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type: directory
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description: Directory containing MALT database index directory
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pattern: "malt_index/"
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- log:
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type: file
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description: Log file from STD out of malt-build
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pattern: "malt-build.log"
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authors:
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- "@jfy133"
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