nf-core_modules/software/gatk4
Jose Espinosa-Carrasco 572abb00b3
Remove def from module options definition in main (#270)
* Remove def from module options definition in main

* Fix bismark_deduplicate tests

* Fix bwameth_align tests

* Fixing gatk4 conda tests ("=" instead of ':' in build id)

* Same as previous commit (Fix gatk4 test)

* Fix qualimap bamqc test (no md5 check for pngs)

* Fix seqkit split2 tests. Changed to new test data

* Fix samtools tests. Some were missing initOptions include

* Removing TOOL SUBTOOL template module since now it is included on tools repo
2021-03-15 12:16:43 +00:00
..
bedtointervallist Remove def from module options definition in main (#270) 2021-03-15 12:16:43 +00:00
createsequencedictionary Remove def from module options definition in main (#270) 2021-03-15 12:16:43 +00:00
mergevcfs Remove def from module options definition in main (#270) 2021-03-15 12:16:43 +00:00
revertsam Remove def from module options definition in main (#270) 2021-03-15 12:16:43 +00:00
samtofastq Remove def from module options definition in main (#270) 2021-03-15 12:16:43 +00:00
splitncigarreads Remove def from module options definition in main (#270) 2021-03-15 12:16:43 +00:00