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53 lines
1.3 KiB
YAML
53 lines
1.3 KiB
YAML
name: gatk4_splitintervals
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keywords:
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- interval
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- bed
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tools:
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- gatk4:
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description: Genome Analysis Toolkit (GATK4)
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homepage: https://gatk.broadinstitute.org/hc/en-us
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documentation: https://gatk.broadinstitute.org/hc/en-us/categories/360002369672s
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tool_dev_url: https://github.com/broadinstitute/gatk
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doi: "10.1158/1538-7445.AM2017-3590"
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licence: ["BSD-3-clause"]
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test' ]
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- interval:
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type: file
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description: Interval list or BED
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pattern: "*.{interval,interval_list,bed}"
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- fasta:
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type: file
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description: Reference FASTA
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pattern: "*.{fa,fasta}"
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- fasta_fai:
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type: file
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description: Reference FASTA index
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pattern: "*.fai"
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- dict:
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type: file
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description: Reference sequence dictionary
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pattern: "*.dict"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test' ]
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- bed:
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type: file
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description: A list of scattered interval lists
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pattern: "*.interval_list"
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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authors:
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- "@nvnieuwk"
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