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cad9133c71
* feat added haplogrep classify * feat made module * fix added correct container * feat removed md5sum * fix trying to fix issue with version.yml * fix some small things * fix version * fix on meta.yml * fix stub run * fix Apply suggestions from code review Co-authored-by: Ramprasad Neethiraj <20065894+ramprasadn@users.noreply.github.com> * fix Apply suggestions from code review2 Co-authored-by: Ramprasad Neethiraj <20065894+ramprasadn@users.noreply.github.com> Co-authored-by: Taniguti <ltaniguti@gmail.com> Co-authored-by: Ramprasad Neethiraj <20065894+ramprasadn@users.noreply.github.com>
43 lines
1.1 KiB
YAML
43 lines
1.1 KiB
YAML
name: "haplogrep2_classify"
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description: classification into haplogroups
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keywords:
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- haplogroups.
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tools:
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- "haplogrep2":
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description: "A tool for mtDNA haplogroup classification."
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homepage: "https://github.com/seppinho/haplogrep-cmd"
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documentation: "https://github.com/seppinho/haplogrep-cmd"
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tool_dev_url: "https://github.com/seppinho/haplogrep-cmd"
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doi: ""
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licence: "['MIT']"
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- inputfile:
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type: file
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description: valid options are hsd, vcf, or fasta files
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pattern: "*.{vcf,vcf.gz,fasta,hsd}"
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- format:
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type: stringformat of file either vcf fasta or hsd
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- txt:
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type: file
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description: text file with classification information
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pattern: "*.{txt}"
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authors:
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- "@lucpen"
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