mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-15 06:03:10 +00:00
b5facb2db2
* first draft * fix test run * Apply suggestions from code review Co-authored-by: Jose Espinosa-Carrasco <kadomu@gmail.com> * Update tests/modules/ataqv/mkarv/test.yml * Update tests/modules/ataqv/mkarv/test.yml * Update tests/modules/ataqv/mkarv/test.yml * Update tests/modules/ataqv/mkarv/test.yml * Update tests/modules/ataqv/mkarv/test.yml * Update modules/ataqv/mkarv/nextflow.config * Delete nextflow.config * Update tests/modules/ataqv/mkarv/test.yml * fix linting * fix linting Co-authored-by: bjlang <> Co-authored-by: Jose Espinosa-Carrasco <kadomu@gmail.com>
19 lines
513 B
Text
19 lines
513 B
Text
#!/usr/bin/env nextflow
|
|
|
|
nextflow.enable.dsl = 2
|
|
|
|
include { ATAQV_ATAQV } from '../../../../modules/ataqv/ataqv/main.nf'
|
|
include { ATAQV_MKARV } from '../../../../modules/ataqv/mkarv/main.nf'
|
|
|
|
workflow test_ataqv_mkarv {
|
|
|
|
input = [
|
|
[ id:'test', single_end:false ],
|
|
file(params.test_data['sarscov2']['illumina']['test_paired_end_bam'], checkIfExists: true),
|
|
[],
|
|
[]
|
|
]
|
|
|
|
ATAQV_ATAQV ( input, 'human', [], [], [] )
|
|
ATAQV_MKARV ( ATAQV_ATAQV.out.json.collect{ it[1]} )
|
|
}
|