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cdefbec669
* add kimporttext module * fix the Prettier error. * fix the Prettier error. * fix the test.yml * fix the test.yml * Update modules/krona/ktimporttext/meta.yml Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * Update modules/krona/ktimporttext/meta.yml Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * Update modules/krona/ktimporttext/meta.yml Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * Update modules/krona/ktimporttext/meta.yml Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * Update modules/krona/ktimporttext/meta.yml Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * update the test files; simplify the main script of krona/ktimporttext. * update the test file url for krona ktimporttext Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
47 lines
1.7 KiB
YAML
47 lines
1.7 KiB
YAML
name: "krona_ktimporttext"
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description: Creates a Krona chart from text files listing quantities and lineages.
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keywords:
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- plot
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- taxonomy
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- interactive
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- html
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- visualisation
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- krona chart
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- metagenomics
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tools:
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- krona:
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description: Krona Tools is a set of scripts to create Krona charts from several Bioinformatics tools as well as from text and XML files.
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homepage: https://github.com/marbl/Krona/wiki/KronaTools
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documentation: http://manpages.ubuntu.com/manpages/impish/man1/ktImportTaxonomy.1.html
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tool_dev_url: https://github.com/marbl/Krona
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doi: 10.1186/1471-2105-12-385
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licence: https://raw.githubusercontent.com/marbl/Krona/master/KronaTools/LICENSE.txt
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test']
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- report:
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type: file
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description: "Tab-delimited text file. Each line should be a number followed by a list of wedges to contribute to (starting from the highest level). If no wedges are listed (and just a quantity is given), it will contribute to the top level. If the same lineage is listed more than once, the values will be added. Quantities can be omitted if -q is specified. Lines beginning with '#' will be ignored."
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pattern: "*.{txt}"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test' ]
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- html:
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type: file
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description: A html file containing an interactive krona plot.
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pattern: "*.{html}"
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authors:
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- "@jianhong"
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