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e745e167c1
* fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
34 lines
924 B
YAML
34 lines
924 B
YAML
name: seqtk_subseq
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description: Select only sequences that match the filtering condition
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keywords:
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- filtering,selection
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tools:
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- seqtk:
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description: Seqtk is a fast and lightweight tool for processing sequences in the FASTA or FASTQ format
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homepage: https://github.com/lh3/seqtk
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documentation: https://docs.csc.fi/apps/seqtk/
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tool_dev_url: https://github.com/lh3/seqtk
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licence: ["MIT"]
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input:
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- sequences:
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type: file
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description: FASTQ/FASTA file
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pattern: "*.{fq,fq.gz,fa,fa.gz}"
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- filter_list:
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type: file
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description: BED file or a text file with a list of sequence names
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pattern: "*.{bed,lst}"
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output:
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- sequences:
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type: file
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description: FASTQ/FASTA file
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pattern: "*.{fq.gz,fa.gz}"
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authors:
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- "@sidorov-si"
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