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22 lines
603 B
Text
22 lines
603 B
Text
nextflow.preview.dsl = 2
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process FASTQC {
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input:
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tuple val(name), path(reads)
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output:
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tuple val(name), path ("*fastqc*"), emit: all
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path "*.zip", emit: report // e.g. for MultiQC later
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path "*.version.txt", emit: version
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container 'docker.pkg.github.com/nf-core/fastqc'
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conda "${moduleDir}/environment.yml"
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publishDir "${params.out_dir}", mode: params.publish_dir_mode
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script:
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"""
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fastqc ${params.fastqc_args} -t ${task.cpus} $reads
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fastqc --version | sed -n "s/.*\\(v.*\$\\)/\\1/p" > fastqc.version.txt
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"""
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}
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