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98ed71c8f6
* feat(homer): Add pos2bed module * test(homer): Pass bed format * test(homer): Add upstream dependencies to avoid regressions * Update modules/homer/pos2bed/main.nf Co-authored-by: FriederikeHanssen <Friederike.hanssen@qbic.uni-tuebingen.de>
19 lines
786 B
Text
19 lines
786 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { HOMER_MAKETAGDIRECTORY } from '../../../../modules/homer/maketagdirectory/main.nf'
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include { HOMER_FINDPEAKS } from '../../../../modules/homer/findpeaks/main.nf'
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include { HOMER_POS2BED } from '../../../../modules/homer/pos2bed/main.nf'
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workflow test_homer_pos2bed {
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input = [[id:'test'],
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[file(params.test_data['sarscov2']['genome']['test_bed'], checkIfExists: true),
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file(params.test_data['sarscov2']['genome']['test2_bed'], checkIfExists: true)]]
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fasta = file(params.test_data['sarscov2']['genome']['genome_fasta'], checkIfExists: true)
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HOMER_MAKETAGDIRECTORY (input, fasta)
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HOMER_FINDPEAKS ( HOMER_MAKETAGDIRECTORY.out.tagdir )
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HOMER_POS2BED ( HOMER_FINDPEAKS.out.txt )
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}
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