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https://github.com/MillironX/nf-core_modules.git
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5e7daa7b96
* Add --max--ppsize option * Add args to phantompeakqualtools and all the missing files (test, yml, ...) * Fix tests * Add the nextflow.config * Fix tests
25 lines
655 B
Text
25 lines
655 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { PHANTOMPEAKQUALTOOLS } from '../../../modules/phantompeakqualtools/main.nf'
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workflow test_phantompeakqualtools_single_end {
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input = [
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[ id:'test', single_end:true ], // meta map
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file(params.test_data['sarscov2']['illumina']['test_single_end_bam'], checkIfExists: true)
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]
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PHANTOMPEAKQUALTOOLS ( input )
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}
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workflow test_phantompeakqualtools_paired_end {
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input = [
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[ id:'test', single_end:false ], // meta map
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file(params.test_data['sarscov2']['illumina']['test_paired_end_bam'], checkIfExists: true)
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]
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PHANTOMPEAKQUALTOOLS ( input )
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}
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