mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-12-22 19:18:17 +00:00
60 lines
1.5 KiB
YAML
60 lines
1.5 KiB
YAML
name: vcfanno
|
|
description: quickly annotate your VCF with any number of INFO fields from any number of VCFs or BED files
|
|
keywords:
|
|
- vcf
|
|
- bed
|
|
- annotate
|
|
- variant
|
|
- lua
|
|
- toml
|
|
tools:
|
|
- vcfanno:
|
|
description: annotate a VCF with other VCFs/BEDs/tabixed files
|
|
homepage: None
|
|
documentation: https://github.com/brentp/vcfanno#vcfanno
|
|
tool_dev_url: https://github.com/brentp/vcfanno
|
|
doi: "10.1186/s13059-016-0973-5"
|
|
licence: ["MIT"]
|
|
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- vcf:
|
|
type: file
|
|
description: query VCF file
|
|
pattern: "*.{vcf, vcf.gz}"
|
|
- vcf_tabix:
|
|
type: file
|
|
description: tabix index of query VCF - only needed if vcf is compressed
|
|
pattern: "*.vcf.gz.tbi"
|
|
- toml:
|
|
type: file
|
|
description: configuration file
|
|
pattern: "*.toml"
|
|
- resource_dir:
|
|
type: file
|
|
description: |
|
|
This directory contains referenced files in the TOML config,
|
|
and the corresponding indicies e.g. exac.vcf.gz + exac.vcf.gz.tbi,
|
|
with exception to the lua file.
|
|
|
|
output:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- versions:
|
|
type: file
|
|
description: File containing software versions
|
|
pattern: "versions.yml"
|
|
- vcf:
|
|
type: file
|
|
description: Annotated VCF file
|
|
pattern: "*.vcf"
|
|
|
|
authors:
|
|
- "@projectoriented"
|