nf-core_modules/modules/hisat2/build/meta.yml
Gregor Sturm 906577873b
Bulk update modules to use versions.yml (#739)
* New functions.nf

* Convert code to create versions.yml

* Update meta.yml

* update output channel

* Fix more meta.yml

* Manually update remaining modules

* remove superflous echo

* Fix misformatted meta.yml files

* Fix yaml, was list instead of dict

* fix version for bcftools

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-09-27 09:41:24 +01:00

42 lines
1.1 KiB
YAML

name: hisat2_build
description: Builds HISAT2 index for reference genome
keywords:
- build
- index
- fasta
- genome
- reference
tools:
- hisat2:
description: HISAT2 is a fast and sensitive alignment program for mapping next-generation sequencing reads (both DNA and RNA) to a population of human genomes as well as to a single reference genome.
homepage: https://daehwankimlab.github.io/hisat2/
documentation: https://daehwankimlab.github.io/hisat2/manual/
doi: "10.1038/s41587-019-0201-4"
licence: ['MIT']
input:
- fasta:
type: file
description: Reference fasta file
pattern: "*.{fa,fasta,fna}"
- gtf:
type: file
description: Reference gtf annotation file
pattern: "*.{gtf}"
- splicesites:
type: file
description: Splices sites in gtf file
pattern: "*.{txt}"
output:
- version:
type: file
description: File containing software version
pattern: "versions.yml"
- index:
type: file
description: HISAT2 genome index file
pattern: "*.ht2"
authors:
- "@ntoda03"