nf-core_modules/modules/last/train/meta.yml
Gregor Sturm 906577873b
Bulk update modules to use versions.yml (#739)
* New functions.nf

* Convert code to create versions.yml

* Update meta.yml

* update output channel

* Fix more meta.yml

* Manually update remaining modules

* remove superflous echo

* Fix misformatted meta.yml files

* Fix yaml, was list instead of dict

* fix version for bcftools

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-09-27 09:41:24 +01:00

48 lines
1.2 KiB
YAML

name: last_train
description: Find suitable score parameters for sequence alignment
keywords:
- LAST
- train
- fastq
- fasta
tools:
- last:
description: LAST finds & aligns related regions of sequences.
homepage: https://gitlab.com/mcfrith/last
documentation: https://gitlab.com/mcfrith/last/-/blob/main/doc/last-train.rst
tool_dev_url: https://gitlab.com/mcfrith/last
doi: ""
licence: ['GPL v3-or-later']
input:
- index:
type: directory
description: Directory containing the files of the LAST index
pattern: "lastdb/"
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- fastx:
type: file
description: FASTA/FASTQ file
pattern: "*.{fasta,fastq}"
output:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- version:
type: file
description: File containing software version
pattern: "versions.yml"
- param_file:
type: file
description: Trained parameter file
pattern: "*.par"
authors:
- "@aleksandrabliznina"