mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-09-22 00:02:04 +00:00
906577873b
* New functions.nf * Convert code to create versions.yml * Update meta.yml * update output channel * Fix more meta.yml * Manually update remaining modules * remove superflous echo * Fix misformatted meta.yml files * Fix yaml, was list instead of dict * fix version for bcftools Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
55 lines
1.6 KiB
YAML
55 lines
1.6 KiB
YAML
name: malt_build
|
|
description: MALT, an acronym for MEGAN alignment tool, is a sequence alignment and analysis tool designed for processing high-throughput sequencing data, especially in the context of metagenomics.
|
|
keywords:
|
|
- malt
|
|
- alignment
|
|
- metagenomics
|
|
- ancient DNA
|
|
- aDNA
|
|
- palaeogenomics
|
|
- archaeogenomics
|
|
- microbiome
|
|
- database
|
|
tools:
|
|
- malt:
|
|
description: A tool for mapping metagenomic data
|
|
homepage: https://www.wsi.uni-tuebingen.de/lehrstuehle/algorithms-in-bioinformatics/software/malt/
|
|
documentation: https://software-ab.informatik.uni-tuebingen.de/download/malt/manual.pdf
|
|
tool_dev_url: None
|
|
doi: "10.1038/s41559-017-0446-6"
|
|
licence: ['GPL v3']
|
|
|
|
input:
|
|
- fastas:
|
|
type: file
|
|
description: Directory of, or FASTA reference files for indexing
|
|
pattern: "*/|*.fasta"
|
|
- seq_type:
|
|
type: string
|
|
description: Type of input data
|
|
pattern: "DNA|Protein"
|
|
- gff:
|
|
type: file
|
|
description: Directory of, or GFF3 files of input FASTA files
|
|
pattern: "*/|*.gff|*.gff3"
|
|
- map_db:
|
|
type: file
|
|
description: MEGAN .db file from https://software-ab.informatik.uni-tuebingen.de/download/megan6/welcome.html
|
|
pattern:
|
|
|
|
output:
|
|
- version:
|
|
type: file
|
|
description: File containing software version
|
|
pattern: "versions.yml"
|
|
- index:
|
|
type: directory
|
|
description: Directory containing MALT database index directory
|
|
pattern: "malt_index/"
|
|
- log:
|
|
type: file
|
|
description: Log file from STD out of malt-build
|
|
pattern: "malt-build.log"
|
|
|
|
authors:
|
|
- "@jfy133"
|