nf-core_modules/modules/unicycler/meta.yml
Gregor Sturm 906577873b
Bulk update modules to use versions.yml (#739)
* New functions.nf

* Convert code to create versions.yml

* Update meta.yml

* update output channel

* Fix more meta.yml

* Manually update remaining modules

* remove superflous echo

* Fix misformatted meta.yml files

* Fix yaml, was list instead of dict

* fix version for bcftools

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-09-27 09:41:24 +01:00

55 lines
1.5 KiB
YAML

name: unicycler
description: Assembles bacterial genomes
keywords:
- genome
- assembly
- genome assembler
- small genome
tools:
- unicycler:
description: Hybrid assembly pipeline for bacterial genomes
homepage: https://github.com/rrwick/Unicycler
documentation: https://github.com/rrwick/Unicycler
tool_dev_url: https://github.com/rrwick/Unicycler
doi: 10.1371/journal.pcbi.1005595
licence: ['GPL v3']
input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- reads:
type: file
description: |
List of input FastQ files of size 1 and 2 for single-end and paired-end data,
respectively.
output:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- version:
type: file
description: File containing software version
pattern: "versions.yml"
- scaffolds:
type: file
description: Fasta file containing scaffolds
pattern: "*.{scaffolds.fa}"
- gfa:
type: file
description: gfa file containing assembly
pattern: "*.{assembly.gfa}"
- log:
type: file
description: unicycler log file
pattern: "*.{log}"
- version:
type: file
description: File containing software version
pattern: "versions.yml"
authors:
- "@JoseEspinosa"
- "@drpatelh"