mirror of
https://github.com/MillironX/nf-core_modules.git
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9c386c5dd8
* feat: add template for Bracken * chore: update version * refactor: change command build * refactor: rename report variable, change quotes * docs: remove refactored input parameter * fix: correctly assign arguments to options * tests: set up single and paired end tests * style: apply prettier * chore: change data sources to official ones * refactor: rename test workflows * tests: use correct input to the new UNTAR module * chore: update md5sums
43 lines
1.7 KiB
YAML
43 lines
1.7 KiB
YAML
- name: bracken bracken test_bracken_bracken_single_end_default_args
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command: nextflow run tests/modules/bracken/bracken -entry test_bracken_bracken_single_end_default_args -c tests/config/nextflow.config
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tags:
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- bracken/bracken
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- bracken
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files:
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- path: output/bracken/test_S.tsv
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md5sum: 4a21ae14ff8a0311d55f139af5247838
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- path: output/bracken/versions.yml
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md5sum: ab8b1550f84a99bae80f050fe718abd0
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- name: bracken bracken test_bracken_bracken_single_end_custom_args
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command: nextflow run tests/modules/bracken/bracken -entry test_bracken_bracken_single_end_custom_args -c tests/config/nextflow.config
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tags:
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- bracken/bracken
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- bracken
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files:
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- path: output/bracken/test_G.tsv
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md5sum: f609b09d6edb5ebc1ea1435d1dd46cde
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- path: output/bracken/versions.yml
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md5sum: af87e8d4c42fbcb0469ab13912b8a9bd
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- name: bracken bracken test_bracken_bracken_paired_end_default_args
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command: nextflow run tests/modules/bracken/bracken -entry test_bracken_bracken_paired_end_default_args -c tests/config/nextflow.config
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tags:
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- bracken/bracken
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- bracken
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files:
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- path: output/bracken/test_S.tsv
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md5sum: 4a21ae14ff8a0311d55f139af5247838
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- path: output/bracken/versions.yml
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md5sum: 4602111eb25bd19a7f9d725acc5921f6
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- name: bracken bracken test_bracken_bracken_paired_end_custom_args
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command: nextflow run tests/modules/bracken/bracken -entry test_bracken_bracken_paired_end_custom_args -c tests/config/nextflow.config
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tags:
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- bracken/bracken
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- bracken
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files:
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- path: output/bracken/test_G.tsv
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md5sum: f609b09d6edb5ebc1ea1435d1dd46cde
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- path: output/bracken/versions.yml
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md5sum: d4618b01df5ac09cc366fe2ae7c13f06
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