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4ed5dc4593
* added module files * latest version * latest version * latest version * latest version * updated test, failing * added comment on why to use tail -n+3 * same as latest test * moved args to the end of script * updated test * double quotes for esearch input * removed tail -n+3, stderr is redirected by nextflow * changed single to double quotes * Update modules/entrezdirect/esearch/main.nf Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * Update modules/entrezdirect/esearch/meta.yml Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * Update meta.yml removed default from database parameter Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
8 lines
261 B
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8 lines
261 B
Text
process {
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publishDir = { "${params.outdir}/${task.process.tokenize(":")[-1].tokenize("_")[0].toLowerCase()}" }
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withName: ENTREZDIRECT_ESEARCHP {
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ext.args = '-sort pub+date -datetype pdat -mindate 2021/06/20 -maxdate 2022/06/20 -spell'
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}
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}
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