nf-core_modules/tests/modules/mlst/test.yml at de862972ab9f270dd42a5f16a8765273fe7806fb - millironx/nf-core_modules - Milliron X Code: Code hosting for cattle or technology, but especially anything to do with both of them

millironx/nf-core_modules

mirror of https://github.com/MillironX/nf-core_modules.git synced 2024-12-25 12:08:16 +00:00

Lee Katz f20c427339

added classic mlst module (#742 )

* added classic mlst module

* removed nf-core TODO comments

* included drpatelh suggestions

* adjust version capture identation

* update main to pass lint

* follow output expected by test.yml

* suggested prefix change from rpetit3

* Apply suggestions from code review

Co-authored-by: Gregor Sturm <mail@gregor-sturm.de>
Co-authored-by: Robert A. Petit III <robbie.petit@gmail.com>
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>

2021-10-05 20:49:46 +01:00

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 - name: mlst test_mlst
   command: nextflow run tests/modules/mlst -entry test_mlst -c tests/config/nextflow.config
   tags:
     - mlst
   files:
     - path: output/mlst/test.tsv
       md5sum: b52df6178834a156c9402012718eb65e