mirror of
https://github.com/MillironX/nf-core_modules.git
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e971f538a9
* Specify more guidelines on input channels * Linting * Updates based on code review * Update README.md * Fix broken sentence * Fix IQ tree * Fix picard markdup and merge sam * Fix plink/vcf version * Fix plink version output * Fix prokka version command * Fix pydamage * Try fixing markduplicates * Fix snpEff * Fix vcftools version * Fix pydamage and filtersamreads test run * Fix MarkDuplicates tests * Add missing unsorted checks * Remove MD5 sym due to stochasicity in BAM file
19 lines
769 B
YAML
19 lines
769 B
YAML
- name: picard markduplicates sorted bam
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command: nextflow run ./tests/modules/picard/markduplicates -entry test_picard_markduplicates_sorted_bam -c tests/config/nextflow.config
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tags:
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- picard
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- picard/markduplicates
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files:
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- path: ./output/picard/test.MarkDuplicates.metrics.txt
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- path: ./output/picard/test.bam
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md5sum: b520ccdc3a9edf3c6a314983752881f2
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- name: picard markduplicates unsorted bam
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command: nextflow run ./tests/modules/picard/markduplicates -entry test_picard_markduplicates_unsorted_bam -c tests/config/nextflow.config
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tags:
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- picard
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- picard/markduplicates
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files:
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- path: ./output/picard/test.MarkDuplicates.metrics.txt
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- path: ./output/picard/test.bam
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md5sum: 46a6fc76048ba801d328f869ac9db020
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