mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-12-25 12:08:16 +00:00
0ba88fb869
* add module roary * Update meta.yml * Update meta.yml * Update meta.yml * Update meta.yml * Update main.nf * Update meta.yml * Apply suggestions from code review Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
39 lines
1.8 KiB
YAML
39 lines
1.8 KiB
YAML
- name: roary test_roary
|
|
command: nextflow run tests/modules/roary -entry test_roary -c tests/config/nextflow.config
|
|
tags:
|
|
- roary
|
|
files:
|
|
- path: output/roary/results/accessory.header.embl
|
|
contains: ['ID Genome standard; DNA; PRO; 1234 BP.']
|
|
- path: output/roary/results/accessory.tab
|
|
contains: ['FT']
|
|
- path: output/roary/results/accessory_binary_genes.fa
|
|
md5sum: 0baeea4947bf17a2bf29d43a44f0278f
|
|
- path: output/roary/results/accessory_binary_genes.fa.newick
|
|
md5sum: b1f8c76ab231bd38b850c1f8d3c1584b
|
|
- path: output/roary/results/accessory_graph.dot
|
|
contains: ['/* list of nodes */']
|
|
- path: output/roary/results/blast_identity_frequency.Rtab
|
|
md5sum: 829baa25c3fad94b1af207265452a692
|
|
- path: output/roary/results/clustered_proteins
|
|
contains: ['JKHLNHAL_00087']
|
|
- path: output/roary/results/core_accessory.header.embl
|
|
contains: ['ID Genome standard; DNA; PRO; 1234 BP.']
|
|
- path: output/roary/results/core_accessory.tab
|
|
contains: ['FT /taxa="GCF_000292685 GCF_000298385 GCF_002849995"']
|
|
- path: output/roary/results/core_accessory_graph.dot
|
|
contains: ['/* list of nodes */']
|
|
- path: output/roary/results/gene_presence_absence.Rtab
|
|
contains: ['Gene']
|
|
- path: output/roary/results/gene_presence_absence.csv
|
|
contains: ['"Gene","Non-unique Gene name","Annotation","No. isolates","No. sequences"']
|
|
- path: output/roary/results/number_of_conserved_genes.Rtab
|
|
contains: ['279']
|
|
- path: output/roary/results/number_of_genes_in_pan_genome.Rtab
|
|
contains: ['279']
|
|
- path: output/roary/results/number_of_new_genes.Rtab
|
|
contains: ['279']
|
|
- path: output/roary/results/number_of_unique_genes.Rtab
|
|
contains: ['279']
|
|
- path: output/roary/results/summary_statistics.txt
|
|
md5sum: 3921b5445df6a7ed59408119b8860a58
|