mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-14 13:43:09 +00:00
043a7d1e3c
* remove deprecated test tags * fix bowtie, gatk4/applybsqr * fix gatk4 baserecalibrator * fixed shovill * fixed yara/mapper * fixed kallistobustools/ref paths
37 lines
1.5 KiB
YAML
37 lines
1.5 KiB
YAML
- name: bwamem2 mem single-end
|
|
command: nextflow run ./tests/software/bwamem2/mem -entry test_bwamem2_mem_single_end -c tests/config/nextflow.config
|
|
tags:
|
|
- bwamem2
|
|
- bwamem2/mem
|
|
files:
|
|
- path: ./output/bwamem2/test.bam
|
|
md5sum: 2133c011119ea11f06f0a9b1621ba05b
|
|
- path: ./output/index/bwamem2/genome.fasta.amb
|
|
md5sum: 3a68b8b2287e07dd3f5f95f4344ba76e
|
|
- path: ./output/index/bwamem2/genome.fasta.pac
|
|
md5sum: 983e3d2cd6f36e2546e6d25a0da78d66
|
|
- path: ./output/index/bwamem2/genome.fasta.0123
|
|
md5sum: b02870de80106104abcb03cd9463e7d8
|
|
- path: ./output/index/bwamem2/genome.fasta.bwt.2bit.64
|
|
md5sum: d097a1b82dee375d41a1ea69895a9216
|
|
- path: ./output/index/bwamem2/genome.fasta.ann
|
|
md5sum: c32e11f6c859f166c7525a9c1d583567
|
|
|
|
- name: bwamem2 mem paired-end
|
|
command: nextflow run ./tests/software/bwamem2/mem -entry test_bwamem2_mem_paired_end -c tests/config/nextflow.config
|
|
tags:
|
|
- bwamem2
|
|
- bwamem2/mem
|
|
files:
|
|
- path: ./output/bwamem2/test.bam
|
|
md5sum: d8fadab5cef04faff1851a8162fc30b5
|
|
- path: ./output/index/bwamem2/genome.fasta.amb
|
|
md5sum: 3a68b8b2287e07dd3f5f95f4344ba76e
|
|
- path: ./output/index/bwamem2/genome.fasta.pac
|
|
md5sum: 983e3d2cd6f36e2546e6d25a0da78d66
|
|
- path: ./output/index/bwamem2/genome.fasta.0123
|
|
md5sum: b02870de80106104abcb03cd9463e7d8
|
|
- path: ./output/index/bwamem2/genome.fasta.bwt.2bit.64
|
|
md5sum: d097a1b82dee375d41a1ea69895a9216
|
|
- path: ./output/index/bwamem2/genome.fasta.ann
|
|
md5sum: c32e11f6c859f166c7525a9c1d583567
|