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24f0bdd14e
* added module seqkit replace * added when * removed extra line * Update modules/seqkit/replace/main.nf Co-authored-by: Robert A. Petit III <robbie.petit@gmail.com> * Updated meta * updated indents Co-authored-by: Cipriano <rrn8@cdc.gov> Co-authored-by: Sateesh Peri <33637490+sateeshperi@users.noreply.github.com> Co-authored-by: Robert A. Petit III <robbie.petit@gmail.com>
24 lines
685 B
Text
24 lines
685 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { SEQKIT_REPLACE } from '../../../../modules/seqkit/replace/main.nf'
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include { SEQKIT_REPLACE as SEQKIT_REPLACEUNCOMP } from '../../../../modules/seqkit/replace/main.nf'
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workflow test_seqkit_replace {
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input = [ [ id:'test' ], // meta map
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[ file(params.test_data['sarscov2']['genome']['genome_fasta'], checkIfExists: true) ]
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]
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SEQKIT_REPLACE ( input )
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}
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workflow test_seqkit_replace_uncomp {
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input = [ [ id:'test' ], // meta map
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[ file(params.test_data['sarscov2']['genome']['genome_fasta'], checkIfExists: true) ]
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]
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SEQKIT_REPLACEUNCOMP ( input )
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}
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