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nf-core_modules/modules/samtools
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Simon Pearce 81d65d4978
Samtools fixmate module (#991) 
* Samtools fixmate module

* Update modules/samtools/fixmate/meta.yml

Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>

* Update modules/samtools/fixmate/main.nf

Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>

* Update main.nf

* Update modules/samtools/fixmate/meta.yml

Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>

* Update meta.yml

Co-authored-by: Simon Pearce <simon.pearce@cruk.manchester.ac.uk>
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
2021-11-01 12:12:14 +00:00
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ampliconclip Backfill software licenses meta (#876) 2021-10-22 15:39:54 -07:00
bam2fq Bam2fq (#958) 2021-10-29 10:46:34 +02:00
depth add new module samtools/depth (#950) 2021-10-28 12:53:21 +02:00
faidx Backfill software licenses meta (#876) 2021-10-22 15:39:54 -07:00
fastq Backfill software licenses meta (#876) 2021-10-22 15:39:54 -07:00
fixmate Samtools fixmate module (#991) 2021-11-01 12:12:14 +00:00
flagstat Backfill software licenses meta (#876) 2021-10-22 15:39:54 -07:00
idxstats Backfill software licenses meta (#876) 2021-10-22 15:39:54 -07:00
index Backfill software licenses meta (#876) 2021-10-22 15:39:54 -07:00
merge Update to allow cram + update needed to use the gatk4 modules in sarek (#976) 2021-10-29 13:01:05 +02:00
mpileup Backfill software licenses meta (#876) 2021-10-22 15:39:54 -07:00
sort Backfill software licenses meta (#876) 2021-10-22 15:39:54 -07:00
stats Update to allow cram + update needed to use the gatk4 modules in sarek (#976) 2021-10-29 13:01:05 +02:00
view Update to allow cram + update needed to use the gatk4 modules in sarek (#976) 2021-10-29 13:01:05 +02:00