mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-11 04:33:10 +00:00
3aacd46da2
* backfilled modules with meta.yml that had no license identifier * harmonized BSD license names * whitespace linting at modules/unzip/meta.yml:12 * harmonized software from US NIH-NCBI/NIST to 'US-Government-Work' * Update modules/bcftools/index/meta.yml `bcftools` is dual-licensed, use associative array to allow for multiple licenses Co-authored-by: Michael L Heuer <heuermh@acm.org> Co-authored-by: Michael L Heuer <heuermh@acm.org>
49 lines
1.3 KiB
YAML
49 lines
1.3 KiB
YAML
name: bcftools_consensus
|
|
description: Compresses VCF files
|
|
keywords:
|
|
- variant calling
|
|
- consensus
|
|
- VCF
|
|
tools:
|
|
- consensus:
|
|
description: |
|
|
Create consensus sequence by applying VCF variants to a reference fasta file.
|
|
homepage: http://samtools.github.io/bcftools/bcftools.html
|
|
documentation: http://www.htslib.org/doc/bcftools.html
|
|
doi: 10.1093/bioinformatics/btp352
|
|
licence: ['MIT']
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- vcf:
|
|
type: file
|
|
description: VCF file
|
|
pattern: "*.{vcf}"
|
|
- tbi:
|
|
type: file
|
|
description: tabix index file
|
|
pattern: "*.{tbi}"
|
|
- fasta:
|
|
type: file
|
|
description: FASTA reference file
|
|
pattern: "*.{fasta,fa}"
|
|
output:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- fasta:
|
|
type: file
|
|
description: FASTA reference consensus file
|
|
pattern: "*.{fasta,fa}"
|
|
- versions:
|
|
type: file
|
|
description: File containing software versions
|
|
pattern: "versions.yml"
|
|
authors:
|
|
- "@joseespinosa"
|
|
- "@drpatelh"
|