mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-12-23 03:28:17 +00:00
894349b9b5
* Update test data names. Closes: #459 Thanks: @FriederikeHanssen (`samtools` tests are already fixed by another commit) * Fix file names in tests. The update of test data name required changes in the test yml files. I also updated the `bismark/summary/main.nf` file to get its data from the `params.test_data` map.
15 lines
750 B
Text
15 lines
750 B
Text
#!/usr/bin/env nextflow
|
|
|
|
nextflow.enable.dsl = 2
|
|
|
|
include { METHYLDACKEL_MBIAS } from '../../../../software/methyldackel/mbias/main.nf' addParams( options: [:] )
|
|
|
|
workflow test_methyldackel_mbias {
|
|
input = [ [ id:'test', single_end:false ], // meta map
|
|
file(params.test_data['sarscov2']['illumina']['test_paired_end_methylated_sorted_bam'], checkIfExists: true),
|
|
file(params.test_data['sarscov2']['illumina']['test_paired_end_methylated_sorted_bam_bai'], checkIfExists: true) ]
|
|
fasta = file(params.test_data['sarscov2']['genome']['genome_fasta'], checkIfExists: true)
|
|
fai = file(params.test_data['sarscov2']['genome']['genome_fasta_fai'], checkIfExists: true)
|
|
|
|
METHYLDACKEL_MBIAS ( input, fasta, fai )
|
|
}
|