mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-12-23 03:28:17 +00:00
912f30e95a
* add software/pairtools * create a branch for pairtools/dedup * remove dedup from the filename.
13 lines
434 B
Text
13 lines
434 B
Text
#!/usr/bin/env nextflow
|
|
|
|
nextflow.enable.dsl = 2
|
|
|
|
include { PAIRTOOLS_DEDUP } from '../../../../software/pairtools/dedup/main.nf' addParams( options: ['suffix':'.dedup'] )
|
|
|
|
workflow test_pairtools_dedup {
|
|
|
|
input = [ [ id:'test', single_end:false ], // meta map
|
|
file("https://raw.githubusercontent.com/open2c/pairtools/master/tests/data/mock.4dedup.pairsam", checkIfExists: true) ]
|
|
|
|
PAIRTOOLS_DEDUP ( input )
|
|
}
|