mirror of
https://github.com/MillironX/nf-core_modules.git
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7b4a28b6e8
* feat: add VEP module * fix: name * fix: EC lint] * feat: add info about params * fix: params as params, not input * fix: improve script * Update software/ensemblvep/environment.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Apply suggestions from code review Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Apply suggestions from code review * Apply suggestions from code review Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
27 lines
791 B
Bash
Executable file
27 lines
791 B
Bash
Executable file
#!/usr/bin/env bash
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set -euo pipefail
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# Build and push all containers
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build_push() {
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GENOME=$1
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SPECIES=$2
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VEP_VERSION=$3
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VEP_TAG=$4
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docker build \
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-t nfcore/vep:${VEP_TAG}.${GENOME} \
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software/vep/. \
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--build-arg GENOME=${GENOME} \
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--build-arg SPECIES=${SPECIES} \
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--build-arg VEP_VERSION=${VEP_VERSION}
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docker push nfcore/vep:${VEP_TAG}.${GENOME}
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}
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build_push "GRCh37" "homo_sapiens" "104" "104.3"
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build_push "GRCh38" "homo_sapiens" "104" "104.3"
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build_push "GRCm38" "mus_musculus" "102" "104.3"
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build_push "GRCm39" "mus_musculus" "104" "104.3"
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build_push "CanFam3.1" "canis_lupus_familiaris" "104" "104.3"
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build_push "WBcel235" "caenorhabditis_elegans" "104" "104.3"
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