nf-core_modules/tests/software/ensemblvep/test.yml at e0d820f9f496d721bc56256b98d8cc219a2de422 - millironx/nf-core_modules - Milliron X Code: Code hosting for cattle or technology, but especially anything to do with both of them

millironx/nf-core_modules

mirror of https://github.com/MillironX/nf-core_modules.git synced 2024-11-14 05:43:08 +00:00

Maxime U. Garcia 7b4a28b6e8

feat: add VEP module (#547 )

* feat: add VEP module

* fix: name

* fix: EC lint]

* feat: add info about params

* fix: params as params, not input

* fix: improve script

* Update software/ensemblvep/environment.yml

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>

* Apply suggestions from code review

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>

* Apply suggestions from code review

* Apply suggestions from code review

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>

2021-07-06 14:11:11 +02:00

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 - name: ensemblvep test_ensemblvep
   command: nextflow run tests/software/ensemblvep -entry test_ensemblvep -c tests/config/nextflow.config
   tags:
     - ensemblvep
   files:
     - path: output/ensemblvep/test.ann.vcf
     - path: output/ensemblvep/test.summary.html