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e745e167c1
* fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
36 lines
918 B
YAML
36 lines
918 B
YAML
name: salmon_index
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description: Create index for salmon
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keywords:
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- index
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- fasta
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- genome
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- reference
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tools:
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- salmon:
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description: |
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Salmon is a tool for wicked-fast transcript quantification from RNA-seq data
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homepage: https://salmon.readthedocs.io/en/latest/salmon.html
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manual: https://salmon.readthedocs.io/en/latest/salmon.html
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doi: 10.1038/nmeth.4197
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licence: ["GPL-3.0-or-later"]
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input:
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- genome_fasta:
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type: file
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description: Fasta file of the reference genome
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- transcriptome_fasta:
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type: file
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description: Fasta file of the reference transcriptome
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output:
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- index:
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type: directory
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description: Folder containing the star index files
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pattern: "salmon"
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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authors:
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- "@kevinmenden"
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- "@drpatelh"
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