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e937c7950a
* Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml
33 lines
1.1 KiB
Text
Executable file
33 lines
1.1 KiB
Text
Executable file
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { NEXTCLADE } from '../../../modules/nextclade/main.nf' addParams( options: [:] )
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workflow test_nextclade_json {
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input = [ [ id:'test', single_end:false ], // meta map
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file(params.test_data['sarscov2']['genome']['genome_fasta'], checkIfExists: true)
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]
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NEXTCLADE ( input, 'json' )
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}
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workflow test_nextclade_csv {
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input = [ [ id:'test', single_end:false ], // meta map
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file(params.test_data['sarscov2']['genome']['genome_fasta'], checkIfExists: true)
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]
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NEXTCLADE ( input, 'csv' )
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}
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workflow test_nextclade_tsv {
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input = [ [ id:'test', single_end:false ], // meta map
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file(params.test_data['sarscov2']['genome']['genome_fasta'], checkIfExists: true)
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]
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NEXTCLADE ( input, 'tsv' )
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}
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workflow test_nextclade_tree {
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input = [ [ id:'test', single_end:false ], // meta map
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file(params.test_data['sarscov2']['genome']['genome_fasta'], checkIfExists: true)
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]
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NEXTCLADE ( input, 'tree' )
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}
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