millironx/nf-core_modules
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nf-core_modules/modules/samtools
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Ramprasad Neethiraj 49b18b1639
add stub to modules used in raredisease pipeline (#1206) 
* add stub section

* add stub for bcftools norm

* add stub to more modules

* fix expansionhunter tests

* revert changes -picard

* Update stub to write version no.s to a file

* add picard

* revert picard again

* add stubs to more modules

* fix bwamem2

* add bcftools view

* add stubs

* fix svdb query

* review suggestions
2022-03-28 17:48:39 +02:00
..
ampliconclip update samtools version to 1.15 (#1358) 2022-02-28 12:42:29 +01:00
bam2fq update samtools version to 1.15 (#1358) 2022-02-28 12:42:29 +01:00
depth update samtools version to 1.15 (#1358) 2022-02-28 12:42:29 +01:00
faidx add stub to modules used in raredisease pipeline (#1206) 2022-03-28 17:48:39 +02:00
fastq update samtools version to 1.15 (#1358) 2022-02-28 12:42:29 +01:00
fixmate update samtools version to 1.15 (#1358) 2022-02-28 12:42:29 +01:00
flagstat update samtools version to 1.15 (#1358) 2022-02-28 12:42:29 +01:00
idxstats update samtools version to 1.15 (#1358) 2022-02-28 12:42:29 +01:00
index add stub to modules used in raredisease pipeline (#1206) 2022-03-28 17:48:39 +02:00
merge add stub to modules used in raredisease pipeline (#1206) 2022-03-28 17:48:39 +02:00
mpileup Mpileup also likes intervals (#1445) 2022-03-25 07:46:51 +01:00
sort add stub to modules used in raredisease pipeline (#1206) 2022-03-28 17:48:39 +02:00
stats add stub to modules used in raredisease pipeline (#1206) 2022-03-28 17:48:39 +02:00
view update samtools version to 1.15 (#1358) 2022-02-28 12:42:29 +01:00