Ramprasad Neethiraj 49b18b1639 add stub to modules used in raredisease pipeline (#1206) ... * add stub section * add stub for bcftools norm * add stub to more modules * fix expansionhunter tests * revert changes -picard * Update stub to write version no.s to a file * add picard * revert picard again * add stubs to more modules * fix bwamem2 * add bcftools view * add stubs * fix svdb query * review suggestions		2022-03-28 17:48:39 +02:00
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ampliconclip	update samtools version to 1.15 (#1358)	2022-02-28 12:42:29 +01:00
bam2fq	update samtools version to 1.15 (#1358)	2022-02-28 12:42:29 +01:00
depth	update samtools version to 1.15 (#1358)	2022-02-28 12:42:29 +01:00
faidx	add stub to modules used in raredisease pipeline (#1206)	2022-03-28 17:48:39 +02:00
fastq	update samtools version to 1.15 (#1358)	2022-02-28 12:42:29 +01:00
fixmate	update samtools version to 1.15 (#1358)	2022-02-28 12:42:29 +01:00
flagstat	update samtools version to 1.15 (#1358)	2022-02-28 12:42:29 +01:00
idxstats	update samtools version to 1.15 (#1358)	2022-02-28 12:42:29 +01:00
index	add stub to modules used in raredisease pipeline (#1206)	2022-03-28 17:48:39 +02:00
merge	add stub to modules used in raredisease pipeline (#1206)	2022-03-28 17:48:39 +02:00
mpileup	Mpileup also likes intervals (#1445)	2022-03-25 07:46:51 +01:00
sort	add stub to modules used in raredisease pipeline (#1206)	2022-03-28 17:48:39 +02:00
stats	add stub to modules used in raredisease pipeline (#1206)	2022-03-28 17:48:39 +02:00
view	update samtools version to 1.15 (#1358)	2022-02-28 12:42:29 +01:00